NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190363_1000364

Scaffold Ga0190363_1000364


Overview

Basic Information
Taxon OID3300021472 Open in IMG/M
Scaffold IDGa0190363_1000364 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)26381
Total Scaffold Genes59 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)49 (83.05%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055333Metagenome138Y
F098394Metagenome103N
F104193Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0190363_100036421F098394N/AMDVLLAALGSFAALASFTLSLTIWLWRLRRNEIAHLYRRLEQIERRIENIEEDLTELRERVARLEERV
Ga0190363_100036429F055333AGGTGGMGESLQNVRAVKVSLPGRSTGMGAYTQHYLYSIRQQKRLEPHRTEWSRTGRHWEDIYYLLPGKYFLAIKDISNSGKHYCRYALLRVFTPEEYREKVKDKEYVMRNFDHYYRHNAYEIIDLPSEHPPAPYVEVPCECLREENAEY
Ga0190363_100036432F104193AGTAGGMLEKLDRVLELLVERERTFDELKAETSLSDETLNLVIDFFLAHDFATKDNNRIRITDSGRKFLEL
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