NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190363_1000957

Scaffold Ga0190363_1000957


Overview

Basic Information
Taxon OID3300021472 Open in IMG/M
Scaffold IDGa0190363_1000957 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17289
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)14 (63.64%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F026175Metagenome198N
F084955Metagenome111Y
F100147Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0190363_100095713F084955AGGAGGMESSYLTANALDKLIALCPETLKNLDEDAAALAEEIISKYNKEEAKSAEKLIFHAITTVSKYLLTERAKDEELDTLLIYFESLFAGTPENPVEAVIGVFTYYLLSKPHFDSYRHLISSYLFDEIDLGEAA
Ga0190363_100095720F026175GAGMALQSIKILNTGKENITKLLTGLGGYAYAAIGVGNDTTAAAETDEHLLGSETNFKDGNQSYFQNANNSYIAQWNSTWVYNDLPSNEISEAAVAQNATNGTVNCLLRCTFDTIYLDADSSFSLILQVSPTQA
Ga0190363_10009578F100147GGAMLKRYIFHGFIFAELQSFRKSNLDIPVMVLQANVPIWDSTAYDRGFQIPADVLRKSVPKGCVPLFLFHDHRECLGHLCEFKYNPYKKALFAKLKILPQKKEKVLRLIKSEGINGISLELETLEERGKYLNKVLRMKITGAALVDRPACRKCRVKLFK
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