NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190363_1004249

Scaffold Ga0190363_1004249


Overview

Basic Information
Taxon OID3300021472 Open in IMG/M
Scaffold IDGa0190363_1004249 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7726
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F016235Metagenome248Y
F067298Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0190363_10042491F009582AGGTGGMVERRGRREFVGGTGRAVKEARVDVVLQRVEEKIGNELNVFPSHIYRYGVNNIFQRAFAYLLGWKSNGEPQKVAVTSGGLLKTAISGAGFEKIQTLTGTAEVNWSPTLQFAWTPNRIRFEAVDYPYIAKFSTDGVEWSDEVYVDGETPRDFDINAQYIKVRRYGGTNATYWIIGMR
Ga0190363_100424910F016235AGGAGGVEGKEISSPPLFSHKRWSHRAGYQRCVRKVGLDKNDDSFGKGFPLCAVIEFKLPVYRYTPRTSEIAKLLATLRILYGDDYMRELNALAEVEYLKMCKNKVWEKFLKEVED
Ga0190363_10042492F067298AGGAGGMVVVIREEDAGRVVRALNLKRRIAELEGQIAELQRRKAELEKEYADLGISIE
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