NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190363_1009623

Scaffold Ga0190363_1009623


Overview

Basic Information
Taxon OID3300021472 Open in IMG/M
Scaffold IDGa0190363_1009623 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-18-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4731
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (85.71%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F014691Metagenome260N
F019588Metagenome228N
F019935Metagenome226Y
F040421Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0190363_10096231F019935N/AMPKVKETPNRVIVHVDDLWKKYHRASPKVRKRWKFRIKDVGRTKHSELILCKPPNKDWQVYGWSFSKKQVKKGKRRLLVYDVKAFEILQKLKENGELRGWKLVFRGV
Ga0190363_100962310F019588GGAGGMSEEKRIEEEVRGVLERLRVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKIGIPVRDLLK
Ga0190363_100962311F040421GGTGGMREESVRAITMLTLAFIIGFKSIILFLQHSFGFAFTLFLLAWTCICFAFPDNLIGAGIGQDLKLGEVIEK
Ga0190363_100962312F014691AGGAGGVRGIGFVSAILILMFVVVGVFTLSIAWSEIPVEPQANTSLANTSTIIPTLTSFLPYLALVVILAMTIGVFLSVVRGK
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.