NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210390_10001612

Scaffold Ga0210390_10001612


Overview

Basic Information
Taxon OID3300021474 Open in IMG/M
Scaffold IDGa0210390_10001612 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)21282
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)26 (74.29%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005124Metagenome / Metatranscriptome411Y
F007233Metagenome / Metatranscriptome355Y
F015917Metagenome / Metatranscriptome251Y

Sequences

Protein IDFamilyRBSSequence
Ga0210390_1000161224F007233GGAGMSKRKQKRHERKPNLDTFSDGIKGKVLDAVSITNEFESRYISLEFQDQTELIITLDVRLTGKLELFDCKTGDQRLVKKIGLVPDDTPLWRPKE
Ga0210390_1000161225F015917AGGAGMAKPKTIRVGNITVTQISPKEREILAQKIKKRHDRLRNRYREIHKKIVDWVSHSVEEGSVYVCIRFMDKTEFSLQFSPQILTDSIDLSDMSTGNVKMLREYYPRRDE
Ga0210390_1000161233F005124N/AVALRTCTVAVKDLRDIEHSIEVSAETLYEAIATALAALQQDSWVGEIGQGFTTVTVIVQQPPVKHEVKMNDFVSWLRRQGRSPAEVLLKQKLEKILGKVNHPRR
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