NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210390_10007649

Scaffold Ga0210390_10007649


Overview

Basic Information
Taxon OID3300021474 Open in IMG/M
Scaffold IDGa0210390_10007649 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-H-11-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8907
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007233Metagenome / Metatranscriptome355Y
F015917Metagenome / Metatranscriptome251Y
F090756Metagenome / Metatranscriptome108Y

Sequences

Protein IDFamilyRBSSequence
Ga0210390_100076495F015917GGAGMAKPKVVQVGNITVTPISAKERNILTEKTQERHERLRNRYREIHGKIVDWVTHSFNDGSLYVSIRFIDKTDFSLQFSPKILTDSIDLSDMSTGNFKMIREYYKRADE
Ga0210390_100076496F007233GGAGMAKGRREPHKRKLNLDTFSDGIKGKVLEAVSISNELECRYISLEFEDKTELTISLDTRLTGKVELFDCKTGDHRLVRKIGLIPDDRPLWRPKG
Ga0210390_100076498F090756AGGAGMTIRIKHSSPNGRRGCPRGPKCRHCTWDSMHITVDGPHPKYTKGHRGDYNGDIDRAIDDFLAKLKLEARRQLRDCAQATPALRQFHLTFS
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