NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210392_10067750

Scaffold Ga0210392_10067750


Overview

Basic Information
Taxon OID3300021475 Open in IMG/M
Scaffold IDGa0210392_10067750 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2258
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001473Metagenome / Metatranscriptome688Y
F002408Metagenome / Metatranscriptome562Y
F005213Metagenome / Metatranscriptome408N

Sequences

Protein IDFamilyRBSSequence
Ga0210392_100677501F002408N/APVAVVSTVPNEMLLNSTPVRLVGGTAAAKADLGVLIRDIYRRQDEVFVRFSIENRSSQTLRAGTPAVVSLTGLKFDRSLWAFQNAQLGMEYASRLKTYDAPIPVKITQCEPGVAEVGPGAARIGLIALQLPPVSPDAKKTQPTVLKILFPIDRAGNLTATLVL
Ga0210392_100677502F001473GAGMESEYQTVGQMYERLRLMIRLRNDTGFRLAMTDAVLEPRNPFEPASKRRPKSVVAITLILALVLALIFLYFSFHHAR
Ga0210392_100677503F005213AGGAGMASSATKMANEPEQTGEERQPDVQLQDVLFSALVTSVCYWTTIFLLAIVGTYLIDWWLTHPGPYAAPANDPWGITTPPWLILPLAPIGVVGSLGHAVWCALRGQRTWKMLITAATLVAVMGCSKLLEIYLAPM
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