NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210392_10238278

Scaffold Ga0210392_10238278


Overview

Basic Information
Taxon OID3300021475 Open in IMG/M
Scaffold IDGa0210392_10238278 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1284
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028637Metagenome / Metatranscriptome191Y
F090827Metagenome / Metatranscriptome108N

Sequences

Protein IDFamilyRBSSequence
Ga0210392_102382781F090827N/AIHGSGGKEHWDTGRLFRCECPEPERLCPVFEANRLEPTVVSAFPRHMKCIVRLLTALVVMWAASGYAQTVFPISENDVDASGTVLMCPKSNIYAPCRDTGSLPLPVEFGGALNLFLPRHRAQEANADASGTAQANALSTALMCPSRGSTYVPCADAGTLPLLVEVGRPPKLFAQVITPHRNGQRRRHRRDFGW
Ga0210392_102382782F028637AGGAGVIIALGEKVFGALLVITGAAIILTGHWTTTDDMMADLIAGGLMLAFGVLVLLMWSFQR
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Institute for Fundamental Biomedical Research
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