NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210392_10267403

Scaffold Ga0210392_10267403


Overview

Basic Information
Taxon OID3300021475 Open in IMG/M
Scaffold IDGa0210392_10267403 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-30-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1217
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Granulicella → unclassified Granulicella → Granulicella sp. S156(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021354Metagenome / Metatranscriptome219Y
F022768Metagenome / Metatranscriptome213Y

Sequences

Protein IDFamilyRBSSequence
Ga0210392_102674031F021354GGAGMRNETTKQAAQEFLAAKLAEDGRKHEDQLNQKTAVSRSLHVWKNFRDAVFAQCSEWNAVTQERTLTCTETPVGDFRVWCSATAKQMTVYYDSKKLLITVRNGARLEVEKDAILQIEGYSTGSGRDAHLTRNNETVNIDSLILGELRLLAGVGRQRVS
Ga0210392_102674032F022768N/AQLSDKPLKDLVAEKQASEDNERRAIYKINRQNDWDVALSVGAHQQVNPLIGSPGAYGEVTVSYNLASRAINKHLDQAAASYDDWKKVQEGDVFRSADVLKQQVVNSISVQDSKLKAFQEQQKQIETNLELLGRAETSAALDFGNQLSTAKLLLQIEIGDAAFRLDQLKEFLSRNF
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