NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187846_10000279

Scaffold Ga0187846_10000279


Overview

Basic Information
Taxon OID3300021476 Open in IMG/M
Scaffold IDGa0187846_10000279 Open in IMG/M
Source Dataset NameBiofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)31031
Total Scaffold Genes35 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (82.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBrazil: State of Minas Gerais
CoordinatesLat. (o)-19.8881Long. (o)-43.6761Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000315Metagenome / Metatranscriptome1319Y
F020867Metagenome / Metatranscriptome221Y
F096383Metagenome / Metatranscriptome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0187846_1000027917F020867GAGMRRWSWAVAMLAAGASAVPARAQQAAGDGPATLTLPPHPTDAGKPVIYDPPFVAKSDAERDCSPGFSCRLRLLGVIQNNGAVELRATAFTW
Ga0187846_100002792F000315GAGMTLGNAAAAHARLIVWCKACGHQVEPDPAEMARQYGAGTSVLDWRNRLVCSRCGSRSVDIVVTGTERR
Ga0187846_100002794F096383N/AMILIIKEELYIIYVPVSDKHPFTLRQADQARTDFAIIEGDLEFLMQRIARLPTAADLWRAAVLIAFVAAVLGIVGIEALWRCFPACSSI

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