NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0187846_10008036

Scaffold Ga0187846_10008036


Overview

Basic Information
Taxon OID3300021476 Open in IMG/M
Scaffold IDGa0187846_10008036 Open in IMG/M
Source Dataset NameBiofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5212
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (57.14%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → Acidobacteriia → Acidobacteriales → Acidobacteriaceae → Candidatus Koribacter → Candidatus Koribacter versatilis(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBrazil: State of Minas Gerais
CoordinatesLat. (o)-19.8881Long. (o)-43.6761Alt. (m)Depth (m)
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016192Metagenome249Y
F050618Metagenome / Metatranscriptome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0187846_100080363F050618GGAGGMKRCKTHLMRVCVFLLASVPAYCQRGTFGIDVGQTSDKFDSLSAVSGLVVGIDGQLRILKETEKRPSIVAGGEIWLPSDTGNHAREYAVFGGPRFHARDFVIGFNVQLEKIVLPNANVDNQFFARDSMRLLETPLVLRYNFGPGKKVFIEAQGAPEFTPHFHQSSSSVVLPHPRLDHGYFVRGTLGYTFGKWYVKAAYETRYLKFVPDQGNPANLYNWKTNRITGGVGFSF
Ga0187846_100080364F016192GAGMKTIIIAAVILCSAAAFGQVGASALSNQVTPVQIVDHPQHASYTRMACDSPLVGGASDTYSYAQGERPLWEFGPVSQPPLPLGDVARAYRKDRVNAKKAEVVLEKQGS
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.