NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0187846_10055529

Scaffold Ga0187846_10055529


Overview

Basic Information
Taxon OID3300021476 Open in IMG/M
Scaffold IDGa0187846_10055529 Open in IMG/M
Source Dataset NameBiofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1745
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location NameBrazil: State of Minas Gerais
CoordinatesLat. (o)-19.8881Long. (o)-43.6761Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000823Metagenome / Metatranscriptome875Y
F000825Metagenome / Metatranscriptome874Y

Sequences

Protein IDFamilyRBSSequence
Ga0187846_100555291F000825AGGAGGMGGHKMRRWMLAALVGAALTMAAMPAQAAWKSYINRELGFSFMAPGEVKASVGTYRGNIAGPRQTIVYRSVEDNIEYKVTVMSFLQAQAEGAAILGEREYMFQDGKKVLMDTFARVEPGKDSVYGRKIVVDLPDKKGRSTGAFYFTKGKLISLEATVLPANGDFASPDPGRFVDSVAFMLSRTEPGAVELETPTLE
Ga0187846_100555292F000823GGAGGMRFTALATLIGAALAATTAPAMAAWRGYISHPLGFAFAAPGELKVEKGAYRGAVAGARDTLVYRFVDDDIEYKAVVIDMGDKANDAATLLGEAEYNFQDGKKVLMDTFGRVDHQYGRKLTIDLPNNAGRATAAFYFINGRIISLQATVLPANGDYDTPEMGRFVDSITFFTVRAEDDAIELPVPPK
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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