Scaffold Ga0187846_10135595

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0187846_10135595

Scaffold Ga0187846_10135595

Overview

Basic Information
Taxon OID	3300021476 Open in IMG/M
Scaffold ID	Ga0187846_10135595 Open in IMG/M
Source Dataset Name	Biofilm microbial communities from the roof of an iron ore cave, State of Minas Gerais, Brazil - TC_06 Biofilm (v2)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1047
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (100.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → unclassified Alphaproteobacteria → Alphaproteobacteria bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Cave → Unclassified → Unclassified → Biofilm → Microbial Communities From Various Locations To Find New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Brazil: State of Minas Gerais
Coordinates	Lat. (^o)	-19.8881	Long. (^o)	-43.6761	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F078082	Metagenome	116	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0187846_101355951	F078082	AGG	MRKFLITAALALSSVTVPAHASGGNQIVNFSGLGQPVTVNGFHYPDVVITPGSAAVGGIVAGNINFVTGQLFGTSAVGTITFIPAGYWGPSPASQPLCFFFPRSDGNFNGYVSIWNEQTRSSAYPAGLASQDASGNWEVTLNLIAYDGFYSMNQVTFFCAPRGAAAPALP

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