Basic Information | |
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Taxon OID | 3300021477 Open in IMG/M |
Scaffold ID | Ga0210398_10000008 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 298905 |
Total Scaffold Genes | 285 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 200 (70.18%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (80.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria → Terrabacteria group → Actinobacteria | (Source: IMG/M) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F018570 | Metagenome / Metatranscriptome | 234 | Y |
F025793 | Metagenome / Metatranscriptome | 200 | Y |
F027915 | Metagenome / Metatranscriptome | 193 | Y |
F057546 | Metagenome / Metatranscriptome | 136 | Y |
F083074 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210398_10000008202 | F083074 | GGA | VRAVQRRYHELMATRKINLPLDEELVRRAREQDVGPGSKSDAQVVEDALSVFLGLRALDDARAQGTLEPEAADELAVAEVRAVRRAHSRA |
Ga0210398_10000008214 | F057546 | GGA | MARLLLPVILATLLLPASANAHASRSHQPHAAAARTVLRRTSIARAEAHKPIQRPTTNPVALSLKLAERYWHGVPACGTPTIVKSLKQLPTSDYETVTSPEPADSVVEMWTEVQNCTITINASLWPSWHQDDEFFQWFCDAMTHEVGHLFGHLDSGQTNPSSITYPFLDSTSPNFNSVPECRGVTLQYGTEEIRDEEIFDHH |
Ga0210398_10000008269 | F018570 | AGGAG | MSRKIQIVLPDPQADQLAELAAGAGEPLSTLAGLFVRTGIAQAAKDGKVRQLRQAPIIVVGGGDRARWLEPYGGDPDWRQEMWGQIVALHGRYPRALANLKDDWWTDDAHTERLCALATWRSELDDAGVDPRDELAFQTQLNDYAHTLRQEGGGVTKTWTPGAPPDEWGGPSEQSG |
Ga0210398_1000000862 | F025793 | GGAG | VSTISKKTDELFMAASLSDGDLGYPADVEFVPADEEWADEVVWRNLIEGQATVLVGEESELLLTPLRRGPLDRLRGRVPVNVSHRVHGHATPYAMPSRLGRHPVRQMRQLAHA |
Ga0210398_1000000863 | F027915 | N/A | VKDRRRRRRLARDVRIVIERTSSYPIEYAIMLVVRRAGRWHTVRTFDNAHDSQEHHEHRYVGPEKQPPSITRGPVNEAMHAAELKLLDGWRDIVDEWERTL |
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