NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210398_10008209

Scaffold Ga0210398_10008209


Overview

Basic Information
Taxon OID3300021477 Open in IMG/M
Scaffold IDGa0210398_10008209 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)9427
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (41.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037871Metagenome / Metatranscriptome167Y
F043794Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0210398_100082094F043794AGGAGGVATDQQARLAVELEYYAQHKSEWLAHKTGRYVVIKDSEPLGFYPDFETAYRAGAAAYGLNTDFLVKEILGHEPVFFVF
Ga0210398_100082095F037871N/AMKRTDEDQWFGAEFAKRLRPFYKSALAGGQTEREFARRLGIDRGGLQRYLRTGAMPSFRTIVFAYREFGIAIPYAGTESGSLVSGNSRRRRRISEFQMNLPLTIEAPQGEINVLIKRKSPQRIRLQLRASRLG
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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