NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210398_10176411

Scaffold Ga0210398_10176411


Overview

Basic Information
Taxon OID3300021477 Open in IMG/M
Scaffold IDGa0210398_10176411 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1741
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000063Metagenome / Metatranscriptome2803Y
F005065Metagenome / Metatranscriptome413Y
F014401Metagenome / Metatranscriptome263Y
F018222Metagenome / Metatranscriptome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0210398_101764112F014401GGAGMNTSKLGPPHKRVWAQFYKAALFESDTNNVSGRIAEAETALVIRARELFDSAEDNIEEEQAVDDAMYALHALRSALKCRENVQNTPEDLAA
Ga0210398_101764113F005065GGAGMMDANYVSERIDNIKQEISDLRVTTAVHWNKSQHTALEKSAYALKKGRLREIKRELSGLMKRRA
Ga0210398_101764114F018222AGGAGMHSDPRKTWQYFAHAVIREDDPAKLTYLMQELYRVLKDNREEPSLA
Ga0210398_101764115F000063N/AMLTEGVWAEVQVGNVHLRLFSEKNAQGTQASVYNVSTKSWIAPSEEVENIEEGKEKTSEHARAYLKHVANSELPPLEWKTSRSR
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