Basic Information | |
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Taxon OID | 3300021477 Open in IMG/M |
Scaffold ID | Ga0210398_10178543 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-O |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1730 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F001473 | Metagenome / Metatranscriptome | 688 | Y |
F002408 | Metagenome / Metatranscriptome | 562 | Y |
F057062 | Metagenome / Metatranscriptome | 136 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0210398_101785431 | F002408 | N/A | ELVPAISDPGQMDFAIDYRQPQPQAQLTQPAQTQPVAPVSAVPGEMLLNSTTVRLVGAETKSNLGVLIRDVYRKQDEVFIRYSIENRSSQTFRTGEPTVVSLRGLKSDRSLWGFQNSQLSVDVASRLKSDGSPIPIKITRCEPGIAEVAPGGARIGVMALELPLADGDAKKAQPTILQIQFPVDRSGSLTATLVL |
Ga0210398_101785432 | F001473 | GGAG | METRYQTVGEMYERLQLMIRQRGDTGFRLAVRDAVLKPRNPFEPANKRRPKPALAIVISVFLALAFVFSYFSFHHGA |
Ga0210398_101785433 | F057062 | N/A | MAMLEREEIRSLVSDGAGLPSAADYACQEIPPETDLQEASFSEMVTSVCYWSTVVLLAVAGAGLLYWRFRHPGSAAAPVTDPFGITTPPWMMLSLPPIGVVASVGHAAWCAARGRRAWRMLMTAASLIAVMSATTVFETYLTAL |
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