NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10035162

Scaffold Ga0210402_10035162


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10035162 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4344
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000528Metagenome / Metatranscriptome1047Y
F019161Metagenome231Y
F025246Metagenome / Metatranscriptome202Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_100351622F025246GAGGMDLRCPKCNSTDLKKVSLAYEEGLFRSEGRTRLRAVAVGSGGPDLVVGRATTRGTEKSALSKKLAPPAKWSYLKVVGWSVLVFLFAGWLVFYVNTVTTNATTVSSAPLTFFALISGAIFALLLFLAWRHNHSIYQTQYAQWEKSFICERCGTVSQQVLN
Ga0210402_100351624F019161GGAGGMQKNVDVLTVKDSQKFEVHCRAGDAGELCVGAESVSVKVGQRLRRDGGQEIWHSVGVYAKEEEDGTLVVQVLVFNPDWDEALQIASIKSRPRDGGCDPALGCNLDHVTP
Ga0210402_100351625F000528N/AMGEWKAQVSFRIPKDLRLELEQFAAREKRSVGNIGAVLLDWSFQQLKVAGSIDRLLKYAIRPSVLHPKRR
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