Basic Information | |
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Taxon OID | 3300021478 Open in IMG/M |
Scaffold ID | Ga0210402_10580795 Open in IMG/M |
Source Dataset Name | Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1039 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Massachusetts | |||||||
Coordinates | Lat. (o) | 42.481016 | Long. (o) | -72.178343 | Alt. (m) | Depth (m) | Location on Map | |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F003186 | Metagenome / Metatranscriptome | 502 | N |
F010139 | Metagenome / Metatranscriptome | 308 | Y |
F103703 | Metagenome / Metatranscriptome | 101 | N |
Protein ID | Family | RBS | Sequence |
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Ga0210402_105807951 | F103703 | N/A | SGAMASFEEISVNPSDFTNPPSKGDWVTAWGAQYVVTALRQPDAYGMIALTLLQRS |
Ga0210402_105807952 | F003186 | N/A | VINPRIILGEWVTALQSCPDLVAALGGGDPANIRAFMEGLATDNNVRLAILQMPPGSILVAWQGTAPRRLTGGALHFAHRFSLYLRAAEQDSGGTYADLFWLLVSAIQAGAPSWSSLLHFQIDPDCYPMDLDLPSAQRNTVVVSADGATLDYFEVQATLVEQGNPGGE |
Ga0210402_105807953 | F010139 | GAGG | METVHMRSPEGEVKEVEATTETLTPLMVAGWHQVPAPAAEPEAIAQKPAAPAGEEK |
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