NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210402_10595669

Scaffold Ga0210402_10595669


Overview

Basic Information
Taxon OID3300021478 Open in IMG/M
Scaffold IDGa0210402_10595669 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-7-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1025
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales → unclassified Hyphomicrobiales → Hyphomicrobiales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000825Metagenome / Metatranscriptome874Y
F027433Metagenome / Metatranscriptome194Y

Sequences

Protein IDFamilyRBSSequence
Ga0210402_105956691F027433N/AQNKKLLMDTFGRVDRQNGRKLTIDLPNNGGRSTAAFYFVNGRIVSLQATVLPANGDYGTPEMGRFIDSITFFTIRAPEDAIELPAPPK
Ga0210402_105956692F000825GGAGGMRRWILAAMAGSALAMAAIPAQAAWKSYVNRELGFSFMAPGEVKTSIGNSRTELAGPRQSIVYSSVEDNIEYKVTVWSFLQAQAEGATLLGERTYLFQNHRKLLMDTFARVEPGKDAVYGRKMVIELPDNKGRVTGAFYFNKGKLYAFEATVLPAHGDFGSPEPARFVDSLVFTLSRTEPGAVELKTPELE
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