NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000024

Scaffold Ga0210410_10000024


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000024 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)291871
Total Scaffold Genes268 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)213 (79.48%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)5 (100.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001209Metagenome / Metatranscriptome747Y
F007640Metagenome / Metatranscriptome347Y
F013792Metagenome / Metatranscriptome268Y
F017174Metagenome / Metatranscriptome242Y
F019009Metagenome / Metatranscriptome232Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_10000024176F007640GGAMIGRTAKTVLRNSRQQARPPRKVCPYCMEGDHIAGENHIPHIVVDACRPHHAVLTEERLAAGAEMEKQSSPITSVEMALRSLAVTGRANAAAIEKLSKGLEFCADKLKFSDSGRGTKATGKKNGRQA
Ga0210410_10000024194F013792AGGMRLKDDGPIMSGHDSLAKRLCQVSPYAGCIEPLIGLIPEIMERNDQLRPLWTAWRQNATPDLTPRQYFTRREIKLLCDFVQYVYFASDAFARSARRGR
Ga0210410_10000024196F017174AGGAGMYSWENPDDRISIAQMNSELQHAQLELLSAHCATHQLRLRFSADDLARFGQRDILRKSVQAATALSEYYSSIEKKIPSAEAAAEPSRLTEERILEAIERLSSYLREQREHYLRAAAPLSNHQKALMWPYFSAALLDRIRITELDGKRVPNPPFYEEYRAQGFINLPEIAHMHSVTFLDVIVFNEKVTERTLFHGLVHAVQFDVLGLERYSDLFVRNFVNSKLHFSVPLEAHAFSLESKFAGTPAARFSVEDQVRLWAKQARY
Ga0210410_10000024248F019009GAGMKASRLLWLVWMILTVVRSVTLGQDAPAQPEVSRALLQAKTVYIISGHVRYYKTKGVFAKKELVDTTPFEEPCRKELEKWGRFTLVPDINGADLVIRAYEKGQSNYVFVNSPGVTGSVNVGQSFFILDVWQPSSKKVIWSASKNVGTSWSKNTAIEHLVKKLREDMEEQEKSAPKLDGSKAGSANPQN
Ga0210410_10000024250F001209AGGAGMNSPTEVFSVTPDVLVHNEGTVFVFCPLTAEAKEWINNHVQSDALWFGNALVVEHRFAWGLAQGMKDAELVLE
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