NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000054

Scaffold Ga0210410_10000054


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000054 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)195756
Total Scaffold Genes151 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)120 (79.47%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002530Metagenome / Metatranscriptome551Y
F012996Metagenome / Metatranscriptome275Y
F080102Metagenome / Metatranscriptome115Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_10000054101F012996AGGAMSLTTSRGFAAALLAAACVMHVSAAVGQTPEQQKIWETQRAQRQVDEKAAAQGLARQREARRADPMAWVRTLDPMAPGGWVFRAVAGDGSWAAFSTEHQMKRSGHLVTAWLRQEYPEPLRSAAGDMYSSAVEKVQYDCAKERARVLVAVYYAGNNLAGSQQTEEADPKQATWDSIVPGTQSELIFRWACAADSAGARPR
Ga0210410_10000054107F002530N/AMNRSDEDRILHGLYYFRESIDEDIAVTGEQILWLAMHPLREGENWSAEGRLQSIDTAAFPAEIQSKLAVVKLELPLRYLEYRRLIKYTKRKDAAFSVAVTFAGADRAIRLHTRRGRMDLWYREHRDGILGIAATVLVSFLTALITVAVMMRITK
Ga0210410_10000054128F080102AGGAGMRTTVGCFACLAAAMGSVAFATPPTQTEPTPSYYLRGYYKIDNQRPTWQVSDSSPWSQVKTNAPWVNPLLVKWGYVPFTHDSKHYYCMIEEGARTGSHVVETTFMCGEPDTVLWLLQNNWRPSVPMIGGGPPLESSLRPRPTSGN
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