NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000055

Scaffold Ga0210410_10000055


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000055 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)195029
Total Scaffold Genes166 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)134 (80.72%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003897Metagenome / Metatranscriptome463Y
F011033Metagenome / Metatranscriptome296Y
F012154Metagenome / Metatranscriptome283Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000005574F012154AGTAGGMEDPEANRTVDERRAAALLGLPLPELRWFSRLLGLGHTQEIGNAVRTVFTYEELKRLSSAAAASAK
Ga0210410_1000005583F003897N/AMYNCRECETEINQGTEICPHCGADLTLSVAGADPPAAKPSLQKILLRWGVLLGVLLAAIWSFLWFIVPERQGNPTTQAEARAVESLRQVRTALADYAAAQRGAYPREFEALGEPVRTAAQFAQSVNYQLQYTPGPVEADGSIRSYTLQARAGNYGFLSFYTDNSGAVHATRENRAATAQDSPY
Ga0210410_1000005584F011033AGGAGGMTAPMDSAFLLLLLKVYGAMILLGPILVRAQVKFRAKLNPQLVPVETLPPDVQQFMAPRAQSIVGLGFEPLGYVNVGSMATGTQSFMALFSNPRTMEWADVSVAKSATKMAGYMEFITRCSNDAQVDTNTNSIAPVLFPWPSYHVFRFPQVKDAFTLYRAHRMLVQQNTGGSKPELPPRGQEIAELKRRLERFGPRQQERGYMFLDGGGEYFRLTWKGAILGAWRSIWPISLLRRWWMQSQSEGRLRSMGVAQYRPT
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