NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10000549

Scaffold Ga0210410_10000549


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10000549 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)40709
Total Scaffold Genes40 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)33 (82.50%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000092Metagenome / Metatranscriptome2385Y
F004042Metagenome / Metatranscriptome456Y
F009630Metagenome / Metatranscriptome315Y
F022764Metagenome / Metatranscriptome213Y
F069887Metagenome / Metatranscriptome123Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000054922F000092GAGVKQHLGRQSGVQSVDVSLIDGKVDVTPKEDGQIDPAQLLKAVYDSGVTVAEMDVTARGKIVKDASGNLALQVSPNQSFAIAPNDLLKSVEPLADSPVLVTVRGELYRKPAGKKKPAASAPLKLLILEVQKKE
Ga0210410_1000054923F004042AGGAMNTRKLALLFLLGSAFAPVSQAQIKQIEMRVEGMT
Ga0210410_1000054925F069887N/AMRFAKPLLLTVMAIAFATYAFDCLAMSTPDAAMQCCDTMSCSSRGHQHSQECCKTMPSMHAPFLQPATAHDLSFTPVFVAVLPRFNASQVLDSPSSVLAAQCHAPPILPSIAPSLLRI
Ga0210410_100005493F009630AGGAMKRFALVLGLFAALSFSSGCKKQPSDNEAIRAGIMQHLTSVGTLNISAMDVDIRSVSVNGNQAHAEVEFRPKTGGAPGSGMQVGYNLEKRDGGWVVLKSQALGGMQHPDPNQNPHVNQDVHSGSLPNFNDVLNPAGTPAQGALPPGHPPVNSQQPNAQASGQAQAPAKKPQ
Ga0210410_1000054935F022764GGAGMNAQNLATNAQNTRPRGVGSDVPEEIGKNVPTLAEIHRRALQIHIERGGHDCDLDNYLDEWLQAERELKEKYSTSNDEDAKNK
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