NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10004869

Scaffold Ga0210410_10004869


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10004869 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11740
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (92.86%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria → unclassified Acidobacteria → Acidobacteria bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F034259Metagenome175Y
F044617Metagenome / Metatranscriptome154N
F051804Metagenome / Metatranscriptome143Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_1000486913F044617AGGAGGMTATTNQAQHMPAVALITAEERTELDERIRRKHERLRNRYPEIHDKVVDWVHHYVEEGTLYVCIRFQDKTDFALEFRPQIVRVGTELCDSATEDFDVIRNYYQEQSE
Ga0210410_1000486914F051804AGGAMTKHKPVICTQVSIDVMGPADASRKRIRFVADILRNCIRTLDKDFRRSRIPQMKGFSLKLPRQRHKAKP
Ga0210410_100048699F034259AGGMSKRVDFAKQRRDLGRSLTSAVREITATVEPLAHQHGINLQVILDEASARKEKEKQLLTERLQESVVPLFIDRHGQPDRIGSCVLVRLDSEFYAFTAAHVIRDASTAKLFAPSEGRGGKLRPLPPCTVHLNSSGSATDLDVGVLALEARRLGAFQHHVFLASTEIDQEDQPDDQDDLRSFYFVLGYSASRTQVKISKAERRIHQQSFRFSTQPVDAAEYLQERASKSDHILLDFDHKEIRVEGRRASPPKLQGVSGGGIFQIARKVMRGPLVAIATENRRRSRLVIGTSNQTLSRNGS

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