NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10009372

Scaffold Ga0210410_10009372


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10009372 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8449
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (60.00%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000781Metagenome / Metatranscriptome895Y
F007488Metagenome / Metatranscriptome350Y
F009917Metagenome311Y
F106044Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0210410_100093724F009917AGGAMGTSGWTYVAVVFSLGAQLVVFLRWMHRRMRDDEIQRVFVRDLALRHLPNIYRALNIIAERQGIHLEEQPMVNYVDLRNGGRHR
Ga0210410_100093726F007488N/AMKIRAYEESDLEALRAIHARQGFGYAFPDLGNPLFLTKLVLGREEGGKGIAGAALLRLTAEAYLLLDPEAGSPREKWQWLLGLHEATRCDALARGLEDVHAWLPPEIAKKFGKRLTRLGWVRDDAWTPYCRKLR
Ga0210410_100093727F106044AGGAGMPNLTSNATWDFNPGDPVTLNASFTFDLQDPNDNQTVSGVLTTLQGRTPLVTLAQTDNATISVVVTI
Ga0210410_100093728F000781AGGCGGMLTVAQLAPMKDRDPYLYETLVKIVSAVNATSANAGVDPANASPAPPAIAALKVQAANGWFDLAITDPAVTRPGLFYFAESDVTPAFSAPRVYFLGASRNLYVQLGNQTLYWRAYSQYMGSLASAPVTFGSPAAAVAGGGTSGPAPLPSSGSGALPNGLLRGGNGFGVVPGVRVVKQTVL
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