Scaffold Ga0210410_10013687

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0210410_10013687

Scaffold Ga0210410_10013687

Overview

Basic Information
Taxon OID	3300021479 Open in IMG/M
Scaffold ID	Ga0210410_10013687 Open in IMG/M
Source Dataset Name	Forest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	6989
Total Scaffold Genes	9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	8 (88.89%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (100.00%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → Proteobacteria → Alphaproteobacteria → Hyphomicrobiales	(Source: IMG/M)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location Name	USA: Massachusetts
Coordinates	Lat. (^o)	42.481016	Long. (^o)	-72.178343	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F018228	Metagenome / Metatranscriptome	236	Y
F019366	Metagenome / Metatranscriptome	230	Y
F035904	Metagenome / Metatranscriptome	171	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0210410_100136872	F019366	GGAG	MFYGEKESKALSPRQRELVVLYLSYALEDVRALSEMGSHFLQMAIATISEEANLDTPVQPIQTTTPH
Ga0210410_100136873	F018228	GGCGG	MITSAAEPYIWIWADAPYLREQAQRCTRLARDCPHLPTAHELEAIGVELMQRAAELDDLKEDRDAERPTRD
Ga0210410_100136875	F035904	AGGAG	MAKIELGDKVNCDTATVDQGKVRLGDWAPVFVRPTRAGEKVIRDTTTVDQGKVRLGDWAPVFNPKK

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