NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0210410_10113503

Scaffold Ga0210410_10113503


Overview

Basic Information
Taxon OID3300021479 Open in IMG/M
Scaffold IDGa0210410_10113503 Open in IMG/M
Source Dataset NameForest soil microbial communities from Barre Woods Harvard Forest LTER site, Petersham, Massachusetts, United States - Inc-BW-C-4-M
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2398
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → Acidobacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Forest Soil → Soil → Forest Soil Microbial Communities From Barre Woods Harvard Forest Lter Site, Petersham, Massachusetts, United States

Source Dataset Sampling Location
Location NameUSA: Massachusetts
CoordinatesLat. (o)42.481016Long. (o)-72.178343Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008572Metagenome / Metatranscriptome331Y
F030852Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0210410_101135031F008572N/AGPTPICSSITHLEFELLKPGVSGLVEAKTDGDVMGVDVHCSDVRYAVVQASSNKDGPERLVIAYQDEDCLRDLVAAPSIFGLGFASREEAIANLKSFASDAASSKQKPRKTAMFHGTHANVELAGGPGPVKHHRIPRSILQSALSAVIALFYSKNIVSVMLRMALGASF
Ga0210410_101135032F030852AGAAGMEDEKIDRDEIWSTIRYLDPDEREDKEANTATIVAILALLLIVGGAWVLLWFRVSQS
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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