NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190331_1001364

Scaffold Ga0190331_1001364


Overview

Basic Information
Taxon OID3300021483 Open in IMG/M
Scaffold IDGa0190331_1001364 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4562
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (70.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036512Metagenome169N
F040420Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0190331_10013642F040420N/AMVYGIVKIFGLFAIGILLSVSLSQFLMMDSIDSHLYIDGTYICRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEQSIEIIEPQTDEIIGYVKEDDKNYIRILVWNDCYYYSNVKIA
Ga0190331_10013643F036512AGGAGMYWKVPNYLKRYIRIQDVLKNIFKPCDCGEELKKCEKEKQYCAKRIESLSRTLTHSIILPEVTEHRKCVKEIKPWKIAKKMGNFDLVTADETYYALPLNSWIDVLNSIQPQVEKVLKKWRRDISDCDDFALVTASAVVASFAYDPFEKQVAFAITWSHSHAYNSFITTEGTWEIYEPQSNAIVGQLGKTTGIYKTEKIWFMG
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