NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190331_1003133

Scaffold Ga0190331_1003133


Overview

Basic Information
Taxon OID3300021483 Open in IMG/M
Scaffold IDGa0190331_1003133 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-4-5_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2945
Total Scaffold Genes7 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (42.86%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F040420Metagenome161Y
F050064Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0190331_10031333F040420AGTAGMRNINRFIIIGLMLTISLTQFLALDSIDSHSYIDGTYVCRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEQSIEIIEPQTDEIIGYVDEDNKKYIRIPVWDEKYYYLNLRV
Ga0190331_10031336F050064N/AMTPNRKFKNIDDSPLNEAQKRYALEWLAWKFYNLLLKIGTEDGYCKSYDPLLIEDDKCHSYVFDLGDDGRHHPYKNLREIEDRLFNEVVKRIKKKVYTKK
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