NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190305_1000024

Scaffold Ga0190305_1000024


Overview

Basic Information
Taxon OID3300021488 Open in IMG/M
Scaffold IDGa0190305_1000024 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-2-3_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)45041
Total Scaffold Genes62 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (58.06%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Associated Families5

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036512Metagenome169N
F055334Metagenome138N
F076704Metagenome117N
F084956Metagenome111N
F084957Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0190305_100002427F055334AGGAMTSLIDKLNSVMDTLKNEIDSVLSGYKVMHFLRFPTASDYFPICLIVPIRITPLYRGGLLEDDEYSIIELEIHLITKVPYDYRGERLLKDLDAVMEKLRTLRHDESKWYELDYKGGVDLEYAPVEKWILQSAVIHVKVEA
Ga0190305_100002428F076704AGGAGGMPEYGAIKGWKNRIRIGLESCSNESIWHDGRNPLLNTFTMDTSVDIDKVFVIGSRDAVSMIEGVQEVTGTLERNLYSKNATYNEIIYAGNNSHLDLLTATGMYGEGLQSCKILMNTTSSSDSADYNRVIYGVKFHSYRTSVGAGDIVTESVDYDATNISTH
Ga0190305_100002431F084957AGGMKLEDYKKKKIEKIKCPSGLEVTVNNITPYTLLKILDKLGISSTSEEIYSKPVIDELFKVFLQDPIIGKDIELDDLLREDYIFLHDLIFKRVTLPEE
Ga0190305_100002435F084956N/AMRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVSGEIILNQPFTDDSAIITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQKAIIGKGNIISELECISRFDELAHRYLKEGDQQKYHGTLSEVIQQFISLTGMDITNKSSNDVDIVDLSFKYWELSLLDCLYRILGDKCMLYLNGNTLVIEDKSDEIKYTIDKNSKITNISVETSQEDSYRRCHVRGVKIGEDSAGNDIYIIGEAVDEMVTSNKEIFIEDDTVLTEWDARQRAEQELKTRNELTDAIEITLADLVYPVFGKVRVNLPGINKILELKSLRYTLDENGLYTTLYLGRSYKSLSTIFRSLK
Ga0190305_100002440F036512N/AMINWKIPDYLKRKIRIQDILKNLFGHCDCGERLKQCEKDKAYCAKRIKSLSKTLTHSIILPEVTDHRKYVKEIKPWKIIRKLGNFDLVTADEIYYALPVNSWIKILKSIQPQVEKVLEKWRRDISDCDDFALVTASTVAASFAYDPFERQVAFAIAWSNTHAYDLFITTEGTCEIYEPQSNAVVGRLGKTSGIYETKKIWFMG
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