NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190305_1000176

Scaffold Ga0190305_1000176


Overview

Basic Information
Taxon OID3300021488 Open in IMG/M
Scaffold IDGa0190305_1000176 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-2-3_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16955
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)20 (47.62%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)4 (80.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F050821Metagenome144N
F056227Metagenome137N
F059532Metagenome133N
F100149Metagenome102N

Sequences

Protein IDFamilyRBSSequence
Ga0190305_100017612F056227N/AMEDKDNIQVLVFHRDKEDKNWISRLKNGKIAILHRADTTTPQPNVPYLCKVDEKETYAIAWIQSLYAYPRVIVTPPPRRYVYLESPGDKPSIHTDILNVFDTHDLEYLYVKYPKENRKEIDTPSTESYRDIEIDVRIKIGSESTLKSSFSIKRPRNVDAKTILDEIKNKIK
Ga0190305_100017613F059532GAGMKNILLLGDLHCGSIEGLWHPDCITREGQKIKLSPLQEELYEKWLELQEKLPNYDAVFLMGDIVHGLGSKEFGKDVIDCDLHDQLQCAVKLLKPIVENKKVVVISGSRYHSSIDYDMDRGLAEVLHAKFGGAISNVRLKGTGVIINIAHGVGSRPVYLGTRMNQDIFNAVLTEHFLKMPDVSVIVRAHFHVYSYFSICNKHFIYIPGWNAIRKGRFVTRWYFRQPDIGAVLLSVDDNDNIYVKPYLFKLKSERKNIYVL
Ga0190305_100017614F100149AGGMFWSEEEIEILKSLWVRPDITSKFIKERYLPHRTINAIQKKASSLGLAKEKIKIDYDKIREIIL
Ga0190305_100017623F050821GGAMIVKEMYCNHCKRKTFHECQSNELWRCIQCHNTQFEILDIKEDEIDWSTPTRYVYRSGELAYITLALAPDILRLNELKNLIEGKRVRVPLFKIKDEFLPKYY
Ga0190305_10001765F038026GAGGMLKFMIDRYGNEYNLIIEYKDRAERLIVKNLKDLLQVMADTTLYNFEYKSKYFEQPNYAKVEILWNSE
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