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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021488 Open in IMG/M |
| Scaffold ID | Ga0190305_1000890 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-2-3_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 6603 |
| Total Scaffold Genes | 7 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (28.57%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5931 | Alt. (m) | Depth (m) | 1999 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F050064 | Metagenome | 145 | Y |
| F075530 | Metagenome | 118 | N |
| F084956 | Metagenome | 111 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190305_10008903 | F050064 | N/A | MKKRKFKYIDDLPLNETQKRYVLEWLAWKFYGLLIKLGIEDGYCKSYDPLLIEDDKCHSYIFDLDDDGRHHPYENLKEIEDRLFNEVVKRIKEESIH |
| Ga0190305_10008906 | F084956 | N/A | MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPFTDDNATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTIMGKGNIMSELNCVSRFDELAHRYLKEGDQKDYHGTLSEVIQQFITVTGMDIESKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDNAGNPIYVTGDAVDEMATSNKEIYIEDDTVLTEWDARQRAERELKTRNELTDAIEVTLADLVYPVFGKVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK |
| Ga0190305_10008907 | F075530 | N/A | CESMIGIDQLQIGIDGYSLVSVFQIPNVDSHAPIELTFYGPADFNGQMHINIYPASVIDINNRSFNPNVVLKSFTIDGNYWDGTHIVYLNPSGFDTFAIELNPEYTGTAPRVNIYQSSTTGDGLIYFKKSIAGDQVFNVTHNSETILAEIKYKTPVKNLKIRSLLDRSTELVFEKSFLGENGHFNDSNYYRFNPFESGHVDDCVVAKASGASVYSSQIILDSGEWVQFGLYSLAPFANFPEGHWSGSGDVDAYISLNSTTDTNYMYKVVFANSPYMFPIYNSGCNLLGKDHFYLHLVATTYTTISNMEIRSPVSFANKGFVYLHPNEANKVFIEYKNLNTDATMKLKWRDAYL |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |