NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190305_1001751

Scaffold Ga0190305_1001751


Overview

Basic Information
Taxon OID3300021488 Open in IMG/M
Scaffold IDGa0190305_1001751 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-2-3_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4603
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F096390Metagenome104N
F102257Metagenome101N

Sequences

Protein IDFamilyRBSSequence
Ga0190305_10017512F102257AGAAGGMGYYVSNIIGIRTGGVFSGETDVEDVKNRIREIVLKMREESEKEGSEIIDPDLGWKDGDPSHCMCEKELVGSKGSYIVLAGVFNYWSFEAAEQFAKQLSEEFGTHVMLMSWDEEQNVIKSDVYLEGKSIRENNEDPINSALRRVV
Ga0190305_10017515F096390AGGAGGMADIIKEIINLFVYPITHEVEAHGKLLSDEEKQDLLEREKRRYERELIRIFEKFDRI
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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