NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190305_1003776

Scaffold Ga0190305_1003776


Overview

Basic Information
Taxon OID3300021488 Open in IMG/M
Scaffold IDGa0190305_1003776 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-2-3_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3065
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (25.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F069552Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0190305_10037762F038026GAGGMLKFLIHKNEDEYILIIEYEDRAERLLASDLKNLLQVMADTLLYNFEGKSKYFNQSYHAKIEIT
Ga0190305_10037766F069552N/AMKKNSIAWFVVECTKPITIQLRCFECRIIFSDVPRQLVKNFQSLGRGVYSLVFALKNIDCEEEYFLNNIIETDVSSTGFNKADVEIETTIPNDEEYHRLRKLINDWYKQKVDTFPFFLGIVMYSSYRDWRRMKELGIKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSEPPKFLGTHTYWD
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