NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190336_1003284

Scaffold Ga0190336_1003284


Overview

Basic Information
Taxon OID3300021492 Open in IMG/M
Scaffold IDGa0190336_1003284 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-04-9-10_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3280
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (44.44%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038026Metagenome166Y
F069552Metagenome123N

Sequences

Protein IDFamilyRBSSequence
Ga0190336_10032844F038026AGGMLKFAIDKCGNEYLLIIEYEDGAERLIVKNLKDLLQVMADTTLYNLEGKSKHFEQPNYAKIEILWNSE
Ga0190336_10032848F069552N/AMRKKEIAWFVVECTKPITIQLRCFECRIIFPDVPRQLAKNFQSLRKGMYSLVFALENTNCKQEYFLNNIIEVDVDSTRFSKANVEVETTIPNDEEYQRLRKLINDWYKQKVDTFSFFLGIVMYSSYRDWRRMKELGVKFLELWQEGFSKIGWKPEDVSDYEYYFGKDGRSTPLKSLGTTTFWD
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