NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190306_1001032

Scaffold Ga0190306_1001032


Overview

Basic Information
Taxon OID3300021493 Open in IMG/M
Scaffold IDGa0190306_1001032 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)8152
Total Scaffold Genes14 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023017Metagenome211Y
F029623Metagenome187Y
F042112Metagenome158N
F084954Metagenome111Y

Sequences

Protein IDFamilyRBSSequence
Ga0190306_100103211F029623GGAGGMKNVYAKYVRARLEQGNLIIEVSRDAFKDDEAKKETVKELKQLIKTYFGLRFFIRLSVVYALTALFCASVALAIVLVK
Ga0190306_100103213F084954GAGGMRKLTNFLKNVGRSLKEVLTHKSKGYNDMVIMASAIITTVVVAIIGVYISSQIYETTNLSSDSPFNTAMDAAINIMNTTFPLIVVVAIAIIAGAIMTYLLGGFGVGGGEKGKKGE
Ga0190306_10010323F042112GAGGMSYDDYSSSFPHEEEKYISKLAYPHLLFIQMQRIMDAINAGDDGKEELENLKTLLKPSWREEIDAKMEKYEKEMEREISRIAKVKERVGITTYKEMKRRTIVKYVRRYVQYVIAKLDEVGLLLIEERTVLRGGGMIT
Ga0190306_10010329F023017N/AMRLKKEQREEMKQKIVKFLKNTDGHIASIPMLAKAIKASPPTTKSIVEELEVEKKVKVSTLGGAYVVQLREEESEER
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