NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190306_1001209

Scaffold Ga0190306_1001209


Overview

Basic Information
Taxon OID3300021493 Open in IMG/M
Scaffold IDGa0190306_1001209 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)7315
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (87.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015290Metagenome255N
F017081Metagenome242Y
F024453Metagenome205Y

Sequences

Protein IDFamilyRBSSequence
Ga0190306_10012091F017081GGAGMEERGKKWWWKGVCIFSILTFLIATAQAIDITEITATETQIKITIANASSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSDVMSVNVSKEEKLGEQNFTTQFNNLMQSGNLLNISKLGETIPSVYTSLLTDMFWAIFFGGIFLAYWIRQEDVLLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIA
Ga0190306_10012095F015290GAGGMLNNKGQAGEIAVFVILVFMIAFAYIFISPIVQNIKDVIPTVADATSWTNAQTQAMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVM
Ga0190306_10012096F024453AGGAGGVKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGGEISEVGEGGESGREEEIQKDMEKVRSVHELAQVRKVNAKQ
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