NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
x
This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK
Scaffold Ga0190306_1004509

Scaffold Ga0190306_1004509


Overview

Basic Information
Taxon OID3300021493 Open in IMG/M
Scaffold IDGa0190306_1004509 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-3-4_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3195
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (90.91%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
Zoom:    Powered by OpenStreetMap ©

Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F029954Metagenome186N
F035145Metagenome172Y
F050065Metagenome145Y

Sequences

Protein IDFamilyRBSSequence
Ga0190306_100450910F029954GGAGVREYKFNDGEKKVEYVIPPTNTPFFSVVFSKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIRNETTKS
Ga0190306_10045093F035145AGGAGMLEKLSEFMRRDYNLKTVTIEECCDLVRVEVICFTANTSFPLITLSYNKYTKHFVLAIERRFVTQKSTLQALIEALEKVKEVMKDDRI
Ga0190306_10045094F050065GAGVNDEVKKVLLAITYLKSLLRDAKRRGDKELVEHVGEIIRVYEARLQSQNSNN
 ⦗Top⦘



Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.