Scaffold Ga0190352

Basic Information
Taxon OID	3300021495 Open in IMG/M
Scaffold ID	Ga0190352_1000015 Open in IMG/M
Source Dataset Name	Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300021495 Open in IMG/M

Scaffold ID

Ga0190352_1000015 Open in IMG/M

Source Dataset Name

Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	53435
Total Scaffold Genes	83 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	53 (63.86%)
Novel Protein Genes	9 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (55.56%)
Associated Families	9

Scaffold Components

Scaffold Length (bps)

53435

Total Scaffold Genes

83 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

53 (63.86%)

Novel Protein Genes

9 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (55.56%)

Associated Families

Taxonomy
All Organisms → cellular organisms → Bacteria	(Source: UniRef50)

Taxonomy

All Organisms → cellular organisms → Bacteria

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location Name	Mexico: Guaymas Basin
Coordinates	Lat. (^o)	27.0114	Long. (^o)	-110.5956	Alt. (m)	Depth (m)	2011
Location on Map

Zoom:	Powered by OpenStreetMap^©

Source Dataset Sampling Location

Location Name

Mexico: Guaymas Basin

Coordinates

Lat. (^o)

27.0114

Long. (^o)

-110.5956

Alt. (m)

Depth (m)

2011

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F036512	Metagenome	169	N
F040420	Metagenome	161	Y
F055334	Metagenome	138	N
F057027	Metagenome	136	N
F069552	Metagenome	123	N
F083515	Metagenome	112	Y
F084956	Metagenome	111	N
F084957	Metagenome	111	N
F102256	Metagenome	101	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0190352_100001511	F083515	AGGAGG	MKVRRFESIESLSKFLGKEESGEISVKKVTVVPHISDVFYVFYNEGQNYNITSKIIDFRNFLVREEKTLDDLIRSIEKERMHWQSVDSSSSKRISDYLSWLKDQLTMSAVAVNEMMRETKELIMRRY
Ga0190352_100001518	F057027	AGGAGG	MARKWDRGVFEEARREVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGNPLDMRGSVFTITSMGNYNYEVVYRKPAKEPEIVDESKIEEIVRKVMSGGNKSKEEILLWVKEYLKVEGVQVSDVVIKSVVDRVVG
Ga0190352_100001537	F069552	N/A	MSFSEEKMKKNSIAWFVVECTKSITIQLRCFKCRLMFPDVPRQLVKNFQSLGRGIYSLVFALKNIDCEEEYFLNNIIETHVNSTGFGKANVEVDTTIPNDEEYQKLRKLIDDWYKQKVDTFPFFLGIIMYSSYRDWRRMKELGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSEPPKFLGTHTYWD
Ga0190352_100001559	F102256	AGGA	MSRYKLKVYSCKKCYLEFYYENHITYCPFCGNKLEYIGQVREDEIGEPVYLLKYSTGEKMQRKIEEEEAIKEAEESWYLWED
Ga0190352_100001560	F036512	GGA	MYWKVPNYFKKYVRIQDMLRNIFRPCDCGKELKKCIKDKEYFAKRAEILSRALAKSINLPEPPDPSKEMEEVNPWKIIAKYGKYDILTADKYYYTLPLNSWIKILSPIQTQVEKILPKWREDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSHSHAYNSFITTEGTWEIYEPQSNAIVGRLGKTTGIYKTEKIWFMG
Ga0190352_100001562	F040420	N/A	MGLILSVSLSQFLALDTTDTHTYIDGSYVCRDFSRDLILAASKHHIYLDYIYVPERNHMMVGLYNPLEESIEIIEPQTDEIIGCIKENNKHYIRIPVWDTHIYYSNIKIA
Ga0190352_100001567	F084956	N/A	MKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQVTTPDGWFTYFFPLVRAEIILNQPFTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFMGKIKSETQRTVMGKGNIMSELNCISRFDELAHRYLKEGDQKDFRGTLSEVIQQFVSVAGMDIENKSANSADTVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKTDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGTKIGEDSTGNPIYVTGDAVDEMATSNKEIYIEDDTILTEWDARQRAERELKIRNELTDAIEVTLADLVYPVFGKVRVNLPGITKILELKSLRYTIDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190352_100001571	F084957	N/A	MKIEDYKKKNTKKIKCPSGLEVTVNNITPYTLLRIVDKLGINPTREEVYTKPVIDALFRAFLKEPIIGKDIEIEDFLREDYIFLHNLIFERVTLPEE
Ga0190352_100001576	F055334	AGG	MTSLVDKLNLVMDILKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPTRITPVYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMEKLRTLRHDDSKWYELDYNGGIDLEYSPIEKWILQSAVVHVKVEA

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0190352_1000015

Overview

Ecosystem & Geography

Associated Families

Sequences