NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190352_1000147

Scaffold Ga0190352_1000147


Overview

Basic Information
Taxon OID3300021495 Open in IMG/M
Scaffold IDGa0190352_1000147 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)17557
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F055334Metagenome138N
F084956Metagenome111N
F084957Metagenome111N

Sequences

Protein IDFamilyRBSSequence
Ga0190352_100014713F084956N/AMKRRKRTRAICGIAICGYTICGDISYYLPTVSSSDIKGVAQITTPDGWFTYFFPLVRAEVILNQPYTDDSATITIVHNGQLLIDSDVSIHLGKGLKKVVFIGKIKSETQRTIMGKGNIMSELSCVSRFDELTHRYLKEGDQKDYHGTLSEVIQQFISVAGMDIESKSANDADMVDLSFKYWELSLLDCLYRILGDKCMLYLDGNTLVIEDKSDEIKYTIDKNSKITDINVETSQEDSYRRCHVRGAKIGEDNAGNPIYVTGDAVDEMAASNKEIYIEDDTILTEWDARQRAERELKIRNELTDAIEITLADLVYPVFGNVRVNLPGIAKILELKSLRYTLDENGLFTTLYLGRSYKSLSTIFRSLK
Ga0190352_10001474F055334AGGAMTSLVDKLNSVMDTLKTEIDDALSNYKVMHFLRFPTATDFFPVCFIVPTRITPIYRGGILEEDEYAIIEIEIHLVTRVPFDYRGTRLLEDLDAIMERLRTLRHDDSKWYELDYKGGIDLEYSPIEKWILQSAVVHVKVEA
Ga0190352_10001478F084957AGGAGGMNIEDYKKKKIEKVKCPSGLEVTINNITPYTLLKILDKLGMSARSEQIYSKSVIDELFKVSLKDPVVGRDIELDDFLREDYIFLHDLIFERVTLPEE
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