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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021495 Open in IMG/M |
| Scaffold ID | Ga0190352_1000349 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 11381 |
| Total Scaffold Genes | 27 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 14 (51.85%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5956 | Alt. (m) | Depth (m) | 2011 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F038026 | Metagenome | 166 | Y |
| F056227 | Metagenome | 137 | N |
| F057027 | Metagenome | 136 | N |
| F069552 | Metagenome | 123 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190352_100034910 | F069552 | GGAG | MKKNSIAWFVVECTKSITIQLRCFKCRFMFPDVPRQLVKNFQSLGKGMYSLVFALKNIDCKKEYFLNNIIEADVNSTGFGKANVEVETTIPNDEEYQKLRKLIDDWYKQKVDTFPFFLGIVMYNSYREWRKMKELGVKFLELWQDGFSKIGWKPEDVSDYEYYFGKDGRSTPPKFLGTTTSWD |
| Ga0190352_100034913 | F038026 | GAGG | MLKFMVYKNEDEYVLIIEYEDRAERLLASSLKDLVQVMADTTLYNFEGKSKYFEQSHHAKVEIM |
| Ga0190352_100034919 | F056227 | N/A | MEDKDNQVLVFHRDKDDKNWISRLANGKIAILHRADPTTPQPNVPYLCKVDEKEKYAIAWIQSLHAYPRAIITPPPRRFVYIGAPGEKPAIHTDILSIFDTHSLEYLYVKYPQENREEVKVPSTDYRDVNIDIRIKIGSESTIKYSCTIKRPRNMDAKTILDEIKSKIE |
| Ga0190352_100034927 | F057027 | N/A | EVEEREKRIGFLFPPKNRGEEIHIEILDDTFTQVYEGEVGLDDREVGWTQPQILVRDLKDDRKKAFKLNSGLATQMWRVVENAGGDPLNMEGSVFTITSTGNYNYEVVYRKPAKEPEIVDESKIEEIVKKVMSGGNKSKEEICLWVKEYLKVEGVQVSDVVINSVVDRVVG |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |