NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190352_1004830

Scaffold Ga0190352_1004830


Overview

Basic Information
Taxon OID3300021495 Open in IMG/M
Scaffold IDGa0190352_1004830 Open in IMG/M
Source Dataset NameHydrothermal vent microbial mat bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4872-13-10-11_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2717
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Microbial Mats → Hydrothermal Vent Microbial Mat → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5956Alt. (m)Depth (m)2011
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F036512Metagenome169N
F040420Metagenome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0190352_10048301F036512GGAGGMYWKVPDYLKKYVRIQDMLRNIFRPCDCGEELKKCEKDKKYFARRAETLSKALAKSISLPKPPDPSKEMEEVNPWKFITKYGKYDILTADKYYYTLPLNTWIKILSPIQTQIEKILPKWREDVADCDDYALLMASFVAAVFAKPYYDKQVAFAITWSRSHAYNSFITTEGTWEIYEAQSNAIVGRLGKTTGIYRTEKIWFMG
Ga0190352_10048302F040420N/AMMKILILLVMGILLSLSLNQFLVVDSTDSHPYINGTYVCRDFSRDLILSASKYHIYLDYIYVPEKNHMMVGLYNPLEGSIEIIEPQTDEIKGYVKEDNKNYIRIPVWNDCFYFSNIKIA
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