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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300021498 Open in IMG/M |
| Scaffold ID | Ga0190309_1000149 Open in IMG/M |
| Source Dataset Name | Hydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 22261 |
| Total Scaffold Genes | 39 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 34 (87.18%) |
| Novel Protein Genes | 10 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (80.00%) |
| Associated Families | 10 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Archaea | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Mexico: Guaymas Basin | |||||||
| Coordinates | Lat. (o) | 27.0114 | Long. (o) | -110.5931 | Alt. (m) | Depth (m) | 1999 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F007460 | Metagenome | 350 | N |
| F015290 | Metagenome | 255 | N |
| F017081 | Metagenome | 242 | Y |
| F019588 | Metagenome | 228 | N |
| F019935 | Metagenome | 226 | Y |
| F023017 | Metagenome | 211 | Y |
| F024453 | Metagenome | 205 | Y |
| F042112 | Metagenome | 158 | N |
| F056226 | Metagenome | 137 | N |
| F091134 | Metagenome | 107 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0190309_10001491 | F091134 | N/A | TRAKTVALCVVAYLFFALPSLIHADLVNASLTLPTILSTTFTPLIVFAIAFALLYAYILARSEKKRNIVALTLLTFILIGSSVTNLYEMHKISTQERECAVFKQLKQNSGEDVVFLADKEKWWANYCLCCFYAQRFLPLTSSSTTKYLIVEKKGINEGQKHIARLERCVEGDEMLVVEEV |
| Ga0190309_100014910 | F024453 | AGGAGG | VKMEIPERDGIVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSVYGEEISEVMEGGESGREEGIQKSVEKVRSVHELAQVRRANAEQQGTSR |
| Ga0190309_100014911 | F015290 | AGGAGG | MLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTIADATSWTNAQTQAMNWLFRAWYAFPFFAFITLLVWLIKRAIEKRSGEVV |
| Ga0190309_100014912 | F007460 | AGGTGG | MDDEEGMGMGTAIFVVMLNIIFAIVFFFLIGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKKHKYTYYQQQGGEEEEW |
| Ga0190309_100014914 | F056226 | AGGAGG | MRAYDILLFLVCLEASIGFVASIDLFSTTYVDPSAVQLTNWNVQEIQNQSSEPSLLDTATDAFVRAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME |
| Ga0190309_100014915 | F017081 | GGAG | MVERGREWGWKGICILGIFAFLVATTQAIDITEITATETQIKITIANATSSGYIFVSPSNISFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSDVMSVNVSKEEKLLEQNFTTPFNILMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMISGVAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR |
| Ga0190309_100014919 | F019588 | GGAGG | MGEEKRIEEEMKEVLERLRVPYSVEIVIVDDESGKVVFRWRRGRGNLVRGVQKTIEVLDRKIGIPVKDLLK |
| Ga0190309_100014928 | F019935 | N/A | MPKVKETPNRVIVHVGDLWKKYHRASPKVRKRWKFRIKDVGRVEHSELILCKPPNKDWQVYGWSFSKKQVKKGKRRLLVYDVKAFEILQKLKENGELRGWKLVFRGLTSPLHSFSCL |
| Ga0190309_10001493 | F023017 | AGGAGG | MRLKKEQREEMKQKIVEFLKNVNGHIATIPMLAKVIKASPPTAKSIVGELEVEKKVRIVRLGNDYIVKLEKGGE |
| Ga0190309_10001497 | F042112 | GAGG | MSYDDYSSSFPHEEEKYISKLAYPHLLFIQMQRIMDAINAGDDGKEELENLKTLLKPSWREEIDAKMEKYEKEMEREISRIAKVKERVGITTYKEMKRRAIVKYVRKYVQYVIEKLDEVGLLLIEERTVLRGGGIIT |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |