NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000235

Scaffold Ga0190309_1000235


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000235 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16470
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (47.37%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F038025Metagenome166Y
F072933Metagenome120Y
F093028Metagenome106N
F096386Metagenome104N

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100023517F093028N/AMNLEEYKKWKAPKELELPSGLKIKVRDLSPWDLLVAASRQKEYKPNDPQLIEYLMGKFIVWPEIGKDWEIDDIRPDDFVFLQTKLFESFSLERFDNAIKEVESIREEHKDFSE
Ga0190309_100023518F096386N/AMSKEISVRPSDLLDPYHEEDAITRFAIDLVALVSDIEREPEIETSDINPEEDSLRKRDLEFKKKYNITLEQAKKIVFGDSDGGGRQ
Ga0190309_10002355F072933GGAMISNVTTILNIEHLNPNTTSDLLGPVSLENSIKCAITGEAYFRENASENVRIQIISSPDDGDYDTQPYAQFDVPVAGNQTVRITYAVLPDPKYIKARAINLDPNITADSIKVIVTYTEP
Ga0190309_10002356F038025GAGMRRFTGLIADAEILRKSFWWLYQRGWISKESVSEEDYKDLGLEFPDGCERFDREEIREERYVRTRLGKRISLEQLKELI
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