NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000247

Scaffold Ga0190309_1000247


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000247 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)16038
Total Scaffold Genes25 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (84.00%)
Novel Protein Genes7 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (100.00%)
Associated Families7

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F014691Metagenome260N
F017081Metagenome242Y
F019588Metagenome228N
F019935Metagenome226Y
F024453Metagenome205Y
F055335Metagenome138N

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100024715F019588GGAGGMSEERRIKEEAEKILKELKVPYSVEIVIVDDESGKVVFRWRRGRGNLVKGMQKTIEVLDRKMGIPVKDLLK
Ga0190309_100024717F014691AGGAGGMSERKGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYFALVVILAMAIGVFLSLVRMR
Ga0190309_100024719F017081GGAGMEERRRWWKGICILGIFTFLITTAQAIDITQITATETQIKVTIANATSSGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKPNNTYYVKACDNENCSDVMSVNISKEEKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMIGGVAMIGLFPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0190309_100024720F055335AGGAGGMRAYDILLFLVCLEATIGFVSSLHVFPVSYVDASAVQTPADWNLQEVENQTASQSIFDKVMLATDMLFKALSMFFNMLVAIVAIYIPLTTVLGVPSEIALLLQGVVYVVYAWAIIQFLSGRSVKYME
Ga0190309_100024722F007460AGGTGGMDDEEGIGMGTAIFVVMLNIVFAIIFFFLVGSVMCGILPPLTNVVGISETSPFTQALTVVPNLVNVFFYLPLIFIFTMFVWLFKYIVKRHKYTYYQGGEKE
Ga0190309_100024724F024453AGGAGGMKMEISDRDAVVMYFAILQNLAQRPDLTDLERQALDFASSLLYQSIYSEEISEVGEEVKSVREEGREGDMDKVRSVHELAQVRRANAKQ
Ga0190309_10002474F019935AGGAGGMPKVKETPNRVVVHVGDLWRKYHRASPKVRKRWKFRIKDVGRTKHSELILCKPPNKDWQVYAWSFSKRQVKKGKRRLLVYDVKAFEILQGLKESGELRGWKLVFRG
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