NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000267

Scaffold Ga0190309_1000267


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000267 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15341
Total Scaffold Genes36 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)28 (77.78%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (80.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F019935Metagenome226Y
F023017Metagenome211Y
F029954Metagenome186N
F035145Metagenome172Y
F042112Metagenome158N
F046123Metagenome151Y
F049343Metagenome146Y
F050065Metagenome145Y
F066330Metagenome126N
F072934Metagenome120N

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100026711F046123AGAAGGMGAIKMSCPYKEGSEYCWLCWNWMESAEYCLYDEDDPQREFVLIDEFKDIDPQTYKERMEWIKGLGLMSLYRAFKARRSEKQRSLSDFGVVVMSHE
Ga0190309_100026713F066330N/AVGERMAEGKKRKEGREVVVSVALPIEEYLRLEEAVMRKHGRKRGVFSEFVREAIKKAVEEVLQAGGEE
Ga0190309_100026719F029954GAGGMELRTKEYRFNNGERKVEYVIPPTNTPFLSILFNKEGAVEMITVHQRVFEIHEAVMLMSLLCGVIKNEKRMRNS
Ga0190309_100026721F050065AGGAGGMNMLKATASIEQIMLAITYLKGLLRDAKRRGDKELVKYVGEIISVYEARLQSQNSNN
Ga0190309_100026722F035145AGGAGMLEKSSAFMRRDYNLKTVITEECCDLMRVEVICFTAKTSFPLLSLTYNKLTDNFVLTIERKFITQHSTLKALIEALRSVEEVVRNDERRTERGDM
Ga0190309_100026724F049343AGGGGGMEWSRLRDKLKRGEWYAFSAVCFIAGVVAGKGITTLGRAEPVFVLTGVGAVLLAYWLALLTATIIAEIKERRKEAPKTI
Ga0190309_100026729F023017GAGGMKFKRERREQMKQKILEFLKNADGHIASIPMLARAIQASPPTARSIVFELEVERKVSVVMLGGQYMVRLEEEV
Ga0190309_100026734F042112GGAMTFDEYSSAFPQFEEKYVSKLAYPHLLFIQIQKIMDSIDAGGDGMEELENLKALLKSSWRAEIDMKTEECRKRMEKEIKRIAKVKERVGITTYREMKRAAKVRYVREYVQHVIEKLDEVGLLLIEEQTVLRGGGLMP
Ga0190309_10002675F072934AGGAGGMVEIDIDALLADEEMRKKLNEWNRETAKRRLESMKNLSEPHRRYLEKIASGEWKIW
Ga0190309_10002678F019935N/AMPKIKETTNRVVVHVGDLWRRYHRASPKTKKKWIFRIKDVGRTKHSELILCKPPNGEWQTYAWSFSKRQVKKGKRKLIVYDAKAYEILQKLKEAGELRGWKLIKR
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