NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000357

Scaffold Ga0190309_1000357


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000357 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12901
Total Scaffold Genes21 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)18 (85.71%)
Novel Protein Genes10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (100.00%)
Associated Families10

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007460Metagenome350N
F014691Metagenome260N
F015290Metagenome255N
F017081Metagenome242Y
F019588Metagenome228N
F019935Metagenome226Y
F024453Metagenome205Y
F040421Metagenome161Y
F046123Metagenome151Y
F056226Metagenome137N

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100035710F040421GAGGMREESVRAITMLTLAFIIGFKSIILFLQHSFGFAFTLFLLAWTCICLAFPDNLIGASIGQDLKLREVIGRWMKRRELKGK
Ga0190309_100035711F019588GGAGGMDEEKRIEGEVREVLERLRVPYSVEIVIVDDGSGKVVFRWRRGRGNLVRGMQKTIEVLDRKIGIPIKDLLK
Ga0190309_100035718F019935AGGMPKVKETANRIVVHVGDLWRRYHRASPKTKRRWKFRIKDVGRLKHSELILCKPPNGKWQTYAWSFSKGQVKKGKRKLLIYDAKAFEILQKLKENGDLRGWKLAFKG
Ga0190309_10003572F024453AGGAGGVKMEIPERDGIVMYFAILQNLAQRLDLTDLERQALDFASSLLYQSVYGEEISEVGEEVKSVREEGGEGDMEKVRSVHELAQVRRANAK
Ga0190309_100035720F046123AGGMPCPYKEGSEMCWLCWYWIEAEERCIFDEDDPEREFLLIDEFKDIDPKTYKERMEWLKGLGLMSLYRAVKAGMVKEQRTLGDFGLVVMSHK
Ga0190309_10003573F015290AGGAGGMLNNKGQAGEIAVFVILVFMVAFAYIFISPIVQNIKDVVPTIADITSWTNAQTQTMNWLFRAWYAFPFFAFIALLVWLIKRAIEKRSGEVV
Ga0190309_10003574F007460AGGTGGMDDEEGMGMGTAIFVVMMNIVFAIIFFFLVGSVMCGILPPLTNVVGIGETSPFAQALTVVPNLVNVFFYLPLIFIFMMFVWLFKYIVRRHKYTYYQQGGGEEEW
Ga0190309_10003576F056226AGGAGGMRAYDILLFLVCLEASIGFVASIDLFSTTYIDPSAVQLTDWNVQEIQNQSSSPSLLDTAIDGLVKAIPQFLNMLLAIAIVYIPLTQTLGVPTEVALLFQGAVYLIYVWAIIQFLSGRSVKYME
Ga0190309_10003577F017081GGAGMRKRGRKWWWKGVCILGILTFLIATAQAIDITEIIATETQIKVTIANATSGGYIFVSPSNKSFPYAYSHQGNGTYTITATFLKVNTTYYVKACDNENCSDVMTVSVSKEGKLVEQNFTAPFNNLMQGGNLLNISKLGETIPSVYTSLLTDMFWAMFFGGIFLAYWIRQEDVMLPSIVGMIGGIAMIGLLPPSAQHIAYILLVISIAGTLYTIIKARR
Ga0190309_10003579F014691AGGAGGMRGIGFVSAILILMFVVVAVFTLSIAWSEIPVEPQANTSLANTSSIIPTLTSFLPYLALVVILAMAIGVFLSLVRVK
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