NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000390

Scaffold Ga0190309_1000390


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000390 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12398
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)27 (96.43%)
Novel Protein Genes8 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (100.00%)
Associated Families8

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F023017Metagenome211Y
F029954Metagenome186N
F035145Metagenome172Y
F042112Metagenome158N
F049343Metagenome146Y
F050065Metagenome145Y
F055333Metagenome138Y
F066330Metagenome126N

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100039010F029954GAGGMELRTKEYKFNDGERKVEYVIPPTNTPFFSVVFSKKGEVRMIAIHQRVLEYHEAVVLMSLLCGVIKNEERIR
Ga0190309_100039013F050065AGGMLKATVSMEQQILLAIAYLKGLLRDAKRRGDKELVRYVGEIIGVYEARLQSQNNNN
Ga0190309_100039014F035145AGGAGMLEKLSEFMRRDYNLKTIITEECCDLVRVEVICLTAKTSFPLLSLTYNKHTDNFILTVERKFITQQSTLKALIEALESVKGVMENGGMGQIER
Ga0190309_100039015F049343AGGGGGMVEWGRLRDKLRKGEWYAFSVVCFLAGVVAGKGITVLGRAEPVLALTAVGAVLLAYWLALLTATIIAEIKEAPKTI
Ga0190309_100039020F023017GGAGGMRLKKERREQMKQKILEFLKNAEGHMATIPMLAKAIHASSPTAKSIVWELEVERKVSVVMLGGQYMVKLEERVIKDDY
Ga0190309_100039025F042112GGAMTFDEYSSAFPQFEEKYISKLAYPHLLFIQIQKIMDSIDAGGDGKEELESLKALLKPSWRVEIDVKTERCRKKMEREISRIARVKERVGITTYREMKRAAIVRYVREYVQHVIEKLDEVGLLLIEERGVLRGGGLML
Ga0190309_10003903F066330AGGGGGMAEEEKRKVVVSVALSVDEYLRLEEAVVRKHGRKWGVFSKFVREAIRRAVEEVLQQK
Ga0190309_10003906F055333AGGTGGMSESLQHKRAVKVMLPGRSTGMGAYTQHYLYSIRQQKRLKPHRTESSRTGNHWDDIYYLLSGKYFIAIRDISNSGKHYCRYALLRVFTPEEYREKVKNNKYAMQNFDHYYRNYAYEIIDLPTTQPPAPYVEPPCDCLREKVEW
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