NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0190309_1000525

Scaffold Ga0190309_1000525


Overview

Basic Information
Taxon OID3300021498 Open in IMG/M
Scaffold IDGa0190309_1000525 Open in IMG/M
Source Dataset NameHydrothermal vent sediment bacterial communities from Southern Trench, Guaymas Basin, Mexico - 4870-07-6-7_MG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)10792
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)17 (94.44%)
Novel Protein Genes6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)6 (100.00%)
Associated Families6

Taxonomy
All Organisms → cellular organisms → Archaea(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Hydrothermal Vents → Sediment → Hydrothermal Vent Sediment → Microbial Communities From Sediments And Microbial Mats In Various Locations

Source Dataset Sampling Location
Location NameMexico: Guaymas Basin
CoordinatesLat. (o)27.0114Long. (o)-110.5931Alt. (m)Depth (m)1999
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F009582Metagenome315Y
F016098Metagenome249Y
F016235Metagenome248Y
F024940Metagenome203Y
F028993Metagenome189N
F067298Metagenome125Y

Sequences

Protein IDFamilyRBSSequence
Ga0190309_100052514F067298AGGAGGMVVVIKEEDAGKIIRAFNLKRRIRELEKQIGELQRRKAELEVEYEDLGVEIE
Ga0190309_100052515F009582AGGMREHGRRRKFEGGTGREVREARVDVVLQRVEEEIGEEIKAYPQHVRRFGVNNIFQRTFAYLLGWKTNGKPIKLSATSGGLLRVAVGGAGFEQIDTLTGTAGVNWSAALAFLWTPNRIRFEALDYPYLAKLSPDGVTWTDEVYIDSDMPRDFDINARYIKVRRYGGTDAKYFIMGMR
Ga0190309_100052518F028993AGGMVDIVEKAVKKRSERIAVSEAYYKEGVSAPTKDWLEQFKKAKDRRNAGLRRAMEEGLFEKGAERVGTDGWQKATLAKADRWLTGATAEEANEKYAAAMRDVAECIERARKVVEGMPTTTVEQRAEKSKRFQIEMAKCMEAKKRGR
Ga0190309_10005253F016235AGGAGGMDRNKISSSPPLFFHKRCSHRRGYQKCVKYIGIDKNDERFGRGFPLCAVIKFRIPVHRYTPRTQEIAKLLATLRILYGEEYMEELLALAEVEYLKMRREQKWHIHFGENSD
Ga0190309_10005255F024940AGGMMEREIIYKKIRKANELREFITDALIEHAERRASALIQQNINLFYYEQGFLDALKTVRDLLSKEGLLMYRYVYEEKREREEDENRDTF
Ga0190309_10005257F016098AGGAGGMSEERRYVYMRRTQSGNGVRMRDGEIVYVASIRSLEAFLHGEREFVAFMRFPYRQIPNENAERNILYTYCDKCGGGRFFRKVGEDKWKCETCGTERTTTELIEKMRSILETD
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